Search results for "Evolutionary rates"

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Overlooked cryptic endemism in copepods: Systematics and natural history of the calanoid subgenus Occidodiaptomus Borutzky 1991 (Copepoda, Calanoida,…

2012

Abstract Our comprehension of the phylogeny and diversity of most inland–water crustaceans is currently hampered by their pronounced morphological bradytely, which contributed to the affirmation of the “Cosmopolitanism Paradigm” of freshwater taxa. However, growing evidence of the existence of cryptic diversity and molecular regionalism is available for calanoid copepods, thus stressing the need for careful morphological and molecular studies in order to soundly investigate the systematics, diversity and distribution patterns of the group. Diaptomid copepods were here chosen as model taxa, and the morphological and molecular diversity of the species belonging to the west-Mediterranean diapt…

HemidiaptomusSystematicsSettore BIO/05 - ZoologiaDNA MitochondrialCopepodaEvolution MolecularGeneticsVicarianceDiaptomidaeAnimalsMolecular clockMolecular BiologyCalanoidaEcology Evolution Behavior and SystematicsPhylogenyCell NucleusbiologyEcologyMediterranean RegionSequence Analysis DNAbiology.organism_classificationPhylogeographyTaxonEvolutionary biologyHemidiaptomus Molecular evolutionary rates Morphological conservatism Sibling speciesSubgenusSequence Alignment
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Monte Carlo simulation in phylogenies: an application to test the constancy of evolutionary rates.

1994

Monte Carlo simulation has commonly been used in phylogenetic studies to test different tree-reconstruction methods, and consequently, its application for testing evolutionary models can be considered as a natural extension of this usage. Repetitive simulation of a given evolutionary process, under the restrictions imposed by the model to be tested, along a determinate tree topology allow the estimate of probability distributions for the desired parameters. Next, the phylogenetic tree can be reconstructed again without the constraints of the model, and the parameter of interest, derived from this tree, can be compared to the corresponding probability distribution derived from the restricted…

Least-squares methodBiometryMonte Carlo methodCytochrome c GroupBiologySet (abstract data type)Hybrid Monte Carlosymbols.namesakeGeneticsAnimalsHumansComputer SimulationMolecular BiologyEcology Evolution Behavior and SystematicsMonte Carlo simulationPhylogenyPhylogenetic treeModels GeneticMolecular clockEvolutionary ratesMarkov chain Monte CarloTree (data structure)Genetic TechniquesMutationsymbolsProbability distributionCytochrome-cAlgorithmMonte Carlo MethodMonte Carlo molecular modelingParametric bootstrapJournal of molecular evolution
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